TraC: Transcript Consensus

TraC is a tool for finding consensus sites in splice variants of a single gene or a set of closely related genes. Splice variants and sequences are drawn from the Ensembl database. The algorithm is described in a manuscript in preparation.

Alaleh Azhir, Louis-Henri Merino, David Nauen

Step 1: Transcript entry or upload
Select a transcript by selecting a gene and species (ENSEMBL):
Species: Gene:

And/Or enter the sequences below:
Name: Sequence: delete
Name: Sequence: delete
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Step 2: Settings
Find all shared Sequences:
Please enter the minimum length of a shared sequence:
Weight Probes by:
Length of the Probe Number of Transcripts Containing the Probe

Or check for a specific subsequence:
Check to see if this subsequence is shared among any of the given transcripts: