TraC: Transcript Consensus

TraC is a tool for finding shared sequences in splice variants of a single gene or a set of closely related genes. Splice variants and sequences can be drawn from the Ensembl database. The tool is described in a manuscript in preparation. For best performance please use Chrome, Firefox, or Safari.

Alaleh Azhir, Louis-Henri Merino, David Nauen

Step 1: Transcript entry or upload
Select a transcript by selecting a gene and species (ENSEMBL):
Species: Gene:

And/Or enter the sequences below:
Name: Sequence: Exon Informationinformation:
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Step 2: Settings
Find Shared Sequences:
Please enter the minimum length of a shared sequence:
Weight shared sequence display by:
Length Number of transcripts in which it occurs

Or check the input sequences for a specific subsequence:
Check to see if this subsequence is present among any of the input transcripts: